PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026590.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 346aa    MW: 38011.7 Da    PI: 6.5677
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026590.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.36.8e-3520121293
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssaseceaesssssasnsssg........k 89 
                  +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+q +LG+d++sk+++WL+++ak +i+ l+++   +++ ++++++ ++++++ ss+         +
  CCG026590.1  20 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQARLGYDRPSKAVDWLIKKAKNSIDRLAELppWQPTTNNVNENLEENQNAGSSEMaiaeepesS 117
                  79**************************************************************7644444445333333333323333454444432 PP

          TCP  90 aaks 93 
                    ++
  CCG026590.1 118 GYSF 121
                  2222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.9E-3120128IPR005333Transcription factor, TCP
PROSITE profilePS5136931.1512280IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MKNTGGEIIQ VQGGHIVRST GRKDRHSKVY TAKGPRDRRV RLSAHTAIQF YDVQARLGYD  60
RPSKAVDWLI KKAKNSIDRL AELPPWQPTT NNVNENLEEN QNAGSSEMAI AEEPESSGYS  120
FQLHGQLTDH NPSNGSSFLA PTIDPDTIPD TMRSFFPTSS ANSSMNFQSY PTVISRTANQ  180
SEDLGLSLHS FQDQVLLHGQ SQADTTHTPS TDQTLFEGSA PVGFDANFQR MMAWSNDTNA  240
DNRGAGGFTF NPPPLTPHQA MLAQGSAFSQ RGTLQSSFPI SIRAWNDLHM ASTDHHRAQE  300
LHQSLIFGSR FASEGLAGFS IPARIHGENE HNVVSDRPPS SPNSQN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038215.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR53e-76TCP4_ARATH; Transcription factor TCP4
TrEMBLB9MW220.0B9MW22_POPTR; Uncharacterized protein
STRINGPOPTR_0013s12370.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-77TCP family protein